That may or may not be helpful, but I hope you can find a solution. Is it just a private repo you're wanting to access, or a private organization repo? If the latter, from that first link I think an organization owner has to grant access for the app (so I guess even if you have access as a GitHub user, you don't automatically get access when using the app). You may well have already looked here, but I found this on an initial google: Cloning a Repo to Your Local Machine Click the 'Clone' link next to 'My-First-GitHub-Site' (or the repo you'd like to clone) Source URL: (Leave this at its default. I'll clone the 'My-First-GitHub-Site' to my local machine with SourceTree. However, I'd be surprised if it's not possible to access private repos at all this way. Click the 'Remote' tab to see your repositories Now, you can click 'Clone' to clone one to your local machine. So it could well be that the solution for that is different. So the commonality of my problem with the original question here was "organization repos not appearing" rather than the private/public dimension of the question. But certainly the repos I was concerned with were public ones, just that they belonged to an organization. I'm afraid it's a while since I did this, so I forget the details. 34 I was able to login up until today when it just stopped working. [This Medium article described the same problem and solution, except that they suggest deleting and re-creating the OAuth token, whereas I was able to just edit the settings on mine: not sure if is the same/similar problem to above, but I came across this question when searching for a solution, so thought it good to add my solution here after I worked out what my issue was.) To fix, go to your GitHub settings -> Applications -> Authorized OAuth Apps -> Sourcetree ('SourcetreeForWindows' in my case): you can see the list of permissions granted, and underneath that Organization access, and the option to turn it on. I discovered it was an issue with the default permissions in the OAuth settings by default, it doesn't give organization access. I tried starring the relevant one, but that didn't make a difference. Go to -> Your account -> Settings -> Applications and select Authorized OAuth Apps tab. If not, request authorization by from the organization admin and. Click on SourcetreeForWindows and verify if the organization allows it. Check if that organization allows SourceTree application. I had a similar problem after adding my GitHub account to SourceTree, repos belonging to my organization weren't appearing in the 'Remote repositories' list. Check if that organization allows SourceTree application. Usually when you are just added to new organization.
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